Restructure directory organization

src/atmega/Dockerfile

@@ -13,6 +13,6 @@ WORKDIR /usr/src/
 
 COPY . .
 
-RUN make
+RUN make all
 
 CMD ["./main"]

src/atmega/Makefile

@@ -2,9 +2,7 @@ PROJECT = plant-manager
 
 MCU = atmega328p
 F_CPU = 16000000UL
-PROGRAMMER = arduino
+PROGRAMMER = usbasp
-PORT ?= /dev/ttyACM0
-BAUD = 115200
 
 ARDUINO_INSTALL_PATH = /usr/share/arduino
 ARDUINO_CORE_PATH = $(ARDUINO_INSTALL_PATH)/hardware/arduino/avr/cores/arduino
@@ -12,7 +10,7 @@ ARDUINO_VARIANT_PATH = $(ARDUINO_INSTALL_PATH)/hardware/arduino/avr/variants/sta
 
 CC = avr-gcc
 CXX = avr-g++
-LD = $(CXX) # Use C++ linker
+LD = $(CXX)
 OC = avr-objcopy
 AD = avrdude
 AR = avr-ar
@@ -22,9 +20,8 @@ BUILD_DIR = build
 OBJ_DIR = $(BUILD_DIR)/obj
 CORE_DIR = $(BUILD_DIR)/core
 
-
 CFLAGS = -Wall -Os -DF_CPU=$(F_CPU) -mmcu=$(MCU) -I$(ARDUINO_CORE_PATH) -I$(ARDUINO_VARIANT_PATH) -I.
-CXXFLAGS = $(CFLAGS) -fno-exceptions -fpermissive
+CXXFLAGS = $(CFLAGS) -fno-exceptions -fpermissive -std=gnu++11
 
 LDFLAGS = -Wall -Os -mmcu=$(MCU) -Wl,--gc-sections
 LIBS = -lm
@@ -34,15 +31,19 @@ HDRS = moisture.h config.h
 OBJS = $(addprefix $(OBJ_DIR)/, $(SRCS_CPP:.cpp=.o))
 
 CORE_C_SRCS = \
+	wiring.c \
 	wiring_analog.c \
-	wiring_digital.c
+	wiring_digital.c \
+	hooks.c
 
 CORE_CPP_SRCS = \
 	abi.cpp \
 	new.cpp \
 	Print.cpp \
 	Stream.cpp \
-	HardwareSerial.cpp
+	HardwareSerial.cpp \
+	HardwareSerial0.cpp \
+	main.cpp
 
 CORE_SRCS = $(addprefix $(ARDUINO_CORE_PATH)/, $(CORE_C_SRCS) $(CORE_CPP_SRCS))
 CORE_OBJS = $(patsubst $(ARDUINO_CORE_PATH)/%.c,$(CORE_DIR)/%.o,$(filter %.c,$(CORE_SRCS))) \
@@ -78,7 +79,7 @@ $(TARGET): $(ELF_TARGET)
 	$(OC) -O ihex -R .eeprom $< $@
 
 flash: $(TARGET)
-	$(AD) -v -p $(MCU) -c $(PROGRAMMER) -P $(PORT) -b $(BAUD) -D -U flash:w:$<:i
+	$(AD) -v -p $(MCU) -c $(PROGRAMMER) -D -U flash:w:$<:i
 
 clean:
 	$(RM) $(TARGET) $(ELF_TARGET) $(OBJS) $(CORE_OBJS) $(CORE_LIB)

src/atmega/main.cpp

@@ -1,7 +1,9 @@
+#include <Arduino.h>
 #include <stdint.h>
+#include <stdbool.h>
 #include <avr/sleep.h>
 #include <avr/wdt.h>
-#include "config.h"
+#include <avr/interrupt.h>
 #include "moisture.h"
 
 ISR(WDT_vect) {

src/atmega/moisture.cpp

@@ -1,5 +1,8 @@
 #include <Arduino.h>
 #include <stdint.h>
+#include <stdbool.h>
+#include <avr/io.h>
+#include <avr/interrupt.h>
 #include "moisture.h"
 #include "config.h"
 
@@ -23,6 +26,7 @@ int16_t readMoisture(void) {
     moistureReadingSum += analogRead(MOISTURE_SENSOR_A0);
     moistureReadingCount++;
 
+    //TODO: implement variance check (if over a certain variance discard measurements for this cicle)
     if (moistureReadingCount >= SENSOR_READINGS) {
         int16_t avg = moistureReadingSum / SENSOR_READINGS;
         //Serial.println(avg);